Clickable report tags for identification of modified peptides by mass spectrometry

The identification and quantification of modified peptides are critical for the functional characterization of post-translational protein modifications (PTMs) to elucidate their biological function. Nowadays, quantitative mass spectrometry coupled with various bioinformatic pipelines has been successfully used for the determination of a wide range of PTMs. However, direct characterization of low abundant protein PTMs in bottom-up proteomic workflow remains challenging. Here, we present the synthesis and evaluation of tandem mass spectrometry tags (TMT) which are introduced via click-chemistry into peptides bearing alkyne handles. The fragmentation properties of the two mass tags were validated and used for screening in a model system and analysis of AMPylated proteins. The presented tags provide a valuable tool for diagnostic peak generation to increase confidence in the identification of modified peptides and potentially for direct peptide-PTM quantification from various experimental conditions.     

New Luminescent Lanthanide Tetrakis-Complexes NEt4[LnL4] Based on Dimethyl-N-Benzoylamidophosphate

New lanthanide dimethyl-N-benzoylamidophosphate (HL) based tetrakis-complexes NEt₄[LnL₄] (Ln³⁺=La, Nd, Sm, Eu, Gd, Tb, Dy) are reported. The complexes are characterized by means of NMR, IR, absorption, and luminescent spectroscopy as well as by elemental, X-Ray, and thermal gravimetric analyses. The phenyl groups of the four ligands of the complex anion are directed towards one side, while the methoxy groups are directed in the opposite side, which makes the complexes under consideration structurally similar to calixarenes. The effect of changing the alkali metal counterion to the organic cation NEt₄⁺ on the structure and properties of the tetrakis-complex [LnL4]^- is analyzed. The complexes exhibit bright characteristic for respective lanthanides luminescence. Rather high intensity of the band of ⁵D₀→⁷F₄ transition, observed in the luminescence spectrum of NEt₄[EuL₄], is discussed based on theoretical calculations.     

A novel colorimetric and “turn-on” fluorescent sensor for selective detection of Cu2+

In this work, a new highly selective and sensitive fluorescent sensor for detecting Cu²⁺ was developed based on rhodamine fluorophore. It displayed strong fluorescence “turn-on” effect upon addition of Cu²⁺, and possessed the function of naked eye recognition. The fluorescence enhancement also enabled the sensor to quantitatively analyze Cu²⁺ due to the formation of a stable 1:1 metal–ligand complex in a short time, and the complex possesses relatively good pH stability. In addition, the density functional theory calculations were adopted to investigate the molecular orbitals as well as the spatial structure. Simultaneously, the cell imaging and zebra fish experiments provided a broader application prospect in biological system.     

An innovative SiO2-pyrazole nanocomposite for Zn(II) and Cr(III) ions effective adsorption and anti-sulfate-reducing bacteria from the produced oilfield water

Novel SiO₂-pyrazole (SiO₂-PYZ) nanocomposite was introduced for the elimination of Zn(II) and Cr(III) from oil reservoir water. Characterization analysis of prepared SiO₂-PYZ nanocomposite was investigated using SEM, FTIR, TGA, XRD, TEM, and BET. Studying the effects and optimization of the parameters such as retention time, pH, initial Cr(III) and Zn(II) ions concentrations, adsorbent dosage, and temperature were examined. For kinetics investigation, the pseudo-second-order (PSO) model matches the adsorption process effectively under different operating conditions. After applying two other isotherm models (Langmuir and Freundlich), the experimental data was adequately equipped with Langmuir, R² = 1. The thermodynamic results pointed that the adsorption of Zn(II) and Cr(III) ions was spontaneous, endothermic, and physisorption reaction. At pH 12, the influence of more than one ion, such as Ca(II) and Na(I), was checked, and the results revealed that this conjugate substance was highly selective to Cr(III). After washing with water in multiple cycles, the adsorbed material was regenerated with 0.1 M HCl and subsequently reused without deterioration in its case cavities. Interestingly, SiO₂-PYZ was highly effective against sulfate-reducing bacteria (SRB) in the petroleum field.     

Dual recognition strategy for ultra-sensitive fluorescent detection of Hg2+ at femto-molar level based on aptamer functionalized sulfur quantum dots

In the present study, a dual recognition strategy for ultrasensitive detection of Hg²⁺ was successfully developed for the first time based on aptamer functionalized sulfur quantum dots (Apt-SQDs). The developed Apt-SQDs not only retained the good fluorescence properties of quantum dots but also overcame the problem of poor selectivity of SQDs for heavy metal ions. This system used the dual recognition strategy, including the combination of S_x^2? and Hg²⁺ and T-Hg²⁺-T structures to excellently identify and capture Hg²⁺, and an ultrahigh sensitivity fluorescent aptasensor was fabricated. The fluorescent aptasensor had a good response to Hg²⁺ at concentrations ranging of 10^?15 to 10^?7 M with an ultralow limit of detection of 0.3 fM, and the response to other metal ions was far less than that to Hg²⁺. It was successfully applied to detect Hg²⁺ in nearby environmental water samples (tap water, lake water and river water) with a good recovery rate. Moreover, portable test papers that would be useful for Hg²⁺ monitoring in environmental water were designed. The dual recognition strategy not only achieves ultrasensitive fluorescent detection of Hg²⁺ but also provides a new insight into the further expansion of the application of SQDs.     

Bioelectrochemistry for various facets of tau protein biochemistry

Tau protein undergoes complex biochemical processes involved in normal and diseased cellular functions; specifically, tau pathology has been linked to neurodegeneration. At the heart of tau biochemistry are three pillars: microtubules, phosphorylation, and aggregation. However, these three processes are also regulated through other biomolecules in the biological setting, such as metal ions and small and larger ligands, including proteins and nucleic acids. This review describes the latest electrochemical approaches toward greater understanding of tau biochemistry, early disease diagnosis, and drug inhibitor screening.     

硫鸟嘌呤修饰的Mn:ZnS QDs磷光探针检测铂(Ⅲ)

通过水相合成法制备了硫鸟嘌呤(TG)修饰的锰掺杂硫化锌量子点(TG-Mn:ZnS QDs)。加入Pt⁴⁺后,Pt⁴⁺会与硫鸟嘌呤上的氮原子结合形成N-Pt⁴⁺配位结构附着在TG-Mn:ZnS QDs的表面,随着Pt⁴⁺浓度的增加,TG-Mn:ZnS QDs-Pt⁴⁺体系发生电子转移而导致磷光逐渐被猝灭,基于此构建了检测Pt⁴⁺的磷光探针。实验中考察了p H、时间对Pt⁴⁺猝灭TG-Mn:ZnS QDs磷光强度的影响。在最佳实验条件下,Pt⁴⁺浓度在0.06~2.4μg/mL范围内与TG-Mn:ZnS QDs的磷光强度呈良好的线性关系y=0.0884x+0.2319,R²=0.991,方法检出限(3σ/n)为1.3μg/mL。该磷光探针适用于实际样品中Pt⁴⁺含量的测定。     

局域结构依赖的稀土上转换发光

稀土掺杂上转换发光纳米材料作为一种新型的荧光材料,因其发光性能优异、化学性质稳定以及自发荧光干扰小等优点受到国内外研究者的广泛关注。如何实现稀土上转换发光性能的可控调节一直是稀土纳米发光材料研究中的一个热点问题。简要总结了近年来关于局域结构依赖的稀土上转换发光性能的研究进展,分别从结构设计和晶体结构调节两个方面展开,主要内容包括核壳结构、复合结构和孔洞结构的设计对稀土上转换发光性能的影响及晶体结构对稀土上转换发光强度和上转换发光红绿比的影响,以期为制备高质量、可定制上转换发光性质的稀土掺杂纳米发光材料提供参考。     

碳自掺杂石墨相氮化碳纳米片的制备及其在可见光照射下的光解水产氢性能

石墨相氮化碳(g?C3N4)由于具有对可见光吸收范围较窄和光生载流子分离效率低等缺陷,其光解水产氢活性较差。我们采用简单的一步热共聚法,以尿素和2,4,6?三氨基嘧啶(TAPD)混合物为前驱物,制备碳自掺杂纳米片(CNNS?x,x mg代表掺入TAPD的质量)。X射线衍射(XRD)、元素分析(EA)和X射线光电子能谱(XPS)等测试结果表明,来自TAPD的嘧啶环成功引入g?C3N4共轭体系中,使所得的CNNS?x具有较窄的带隙,较快的光生载流子迁移速率,从而提高其对可见光的吸收效率和光生载流子的分离效率。得益于此,CNNS?x在可见光照射下表现出较好的光解水产氢活性。特别是CNNS?30具有最佳光解水性能,其产氢速率可达57.6μmol·h-1,是g?C3N4纳米片(CNNS)的4倍。     

Preparation and adsorption property of novel inverse-opal hierarchical porous N-doped carbon microspheres

The design of pore structure is the key factor for the performance of porous carbon spheres.In this wo rk,novel micron-sized colloidal crystal microspheres consisting of fibrous silica(F-SiO_2) nanoparticles are firstly prepared by water-evapo ration-induced self-assembly of F-SiO_2 nanoparticles in the droplets of an inverse emulsion system to be used as sacrificial templates.Acrylonitrile(AN) was infiltrated in the voids of the F-SiO_2 colloidal crystal microspheres,and in-situ induced by ~(60)Co y-ray to polymerize into polyacrylonitrile(PAN).After the PAN-infiltrated F-SiO_2 colloidal crystal microspheres were carbonized and etched with HF solution,novel micron-sized inverse-opal N-doped carbon(IO-NC) microspheres consisting of hollow carbon nanoparticles with a hierarchical macro/meso-porous inner surface were obtained.The IO-NC microspheres have a specific surface area as high as 266.4 m~2/g and a molar ratio of C/N of 5.They have a good dispersibility in water,and show a high adsorption capacity towards rhodamine B(RhB) up to 137.28 mg/(g microsphe re).This work offers a way to obtain novel micron-sized hierarchical macro/meso-porous N-doped carbon microspheres,which opens a new idea to prepare high-performance hierarchical porous carbon materials.